Transcript: lnc-PTGDS-2:1

Basic information

LNCipedia transcript ID: lnc-PTGDS-2:1 
LNCipedia gene ID: lnc-PTGDS-2
Ensembl Gene ID: ENSG00000198454
Ensembl Transcript ID: ENST00000371629
Location (hg38): chr9:136969243-136971990
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 978 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000371629.1
Alternative gene names: ENSG00000198454.2; PRR31


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -25.5481 non-coding 
CPAT coding probability 95.23% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PTGDS-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C9orf141-1:1
4.1 lnc-C9orf141-1:1
5.0 lnc-C9orf141-1:1
5.1 lnc-GPSM1-32:1
5.2 lnc-PTGDS-2:1