Transcript: lnc-PTGFR-1:9

Basic information

LNCipedia transcript ID: lnc-PTGFR-1:9 
LNCipedia gene ID: lnc-PTGFR-1
Location (hg38): chr1:78229599-78369462
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1191 bp
Exons: 6
Sources: NONCODE v4; Refseq - Dec 2014
Alternative transcript names: NONHSAT004072; NR_027310
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.4792 non-coding 
CPAT coding probability 35.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTGFR-1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTGFR-1:9
4.0 lnc-PTGFR-1:9
4.1 lnc-PTGFR-1:9
5.0 lnc-PTGFR-1:9
5.1 lnc-GIPC2-4:6
5.2 lnc-PTGFR-1:9