Transcript: lnc-PTGR2-1:1

Basic information

LNCipedia transcript ID: lnc-PTGR2-1:1 
LNCipedia gene ID: lnc-PTGR2-1
Ensembl Gene ID: ENSG00000259065
Ensembl Transcript ID: ENST00000556194
Location (hg38): chr14:73787360-73803217
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 573 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556194.1; RP5-1021I20.1-001; OTTHUMT00000412571.1; NONHSAT037743
Alternative gene names: ENSG00000259065.1; RP5-1021I20.1; OTTHUMG00000171253.1; AC005520.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -764.2871 non-coding 
CPAT coding probability 8.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTGR2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTGR2-1:1
4.0 lnc-PTGR2-1:1
4.1 lnc-PTGR2-1:1
5.0 lnc-PTGR2-1:1
5.1 lnc-ACOT6-6:2
5.2 lnc-PTGR2-1:1