Transcript: lnc-PTGR2-1:2

Basic information

LNCipedia transcript ID: lnc-PTGR2-1:2 
LNCipedia gene ID: lnc-PTGR2-1
Ensembl Gene ID: ENSG00000259065
Ensembl Transcript ID: ENST00000553470
Location (hg38): chr14:73788965-73803270
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 538 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000553470.1; RP5-1021I20.1-002; OTTHUMT00000412572.1
Alternative gene names: ENSG00000259065.1; RP5-1021I20.1; OTTHUMG00000171253.1; AC005520.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -246.9238 non-coding 
CPAT coding probability 8.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTGR2-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTGR2-1:2
4.0 lnc-PTGR2-1:2
4.1 lnc-PTGR2-1:2
5.0 lnc-PTGR2-1:2
5.1 lnc-ACOT6-6:5
5.2 lnc-PTGR2-1:2