Transcript: lnc-PTP4A2-1:2

Basic information

LNCipedia transcript ID: lnc-PTP4A2-1:2 
LNCipedia gene ID: lnc-PTP4A2-1
Location (hg38): chr1:32073033-32075795
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2763 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000203325.3|MICT00000007209.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -66.152 non-coding 
CPAT coding probability 4.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTP4A2-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PTP4A2-1:2
5.0 lnc-PTP4A2-1:2
5.1 lnc-COL16A1-16:1
5.2 lnc-PTP4A2-1:2