Transcript: lnc-PTP4A2-3:10

Basic information

LNCipedia transcript ID: lnc-PTP4A2-3:10 
LNCipedia gene ID: lnc-PTP4A2-3
Location (hg38): chr1:31915540-31919172
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 651 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT002143
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 296.6758 coding 
CPAT coding probability 48.19% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PTP4A2-3:10 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPOCD1-3:9
4.0 lnc-PTP4A2-3:10
4.1 lnc-PTP4A2-3:10
5.0 lnc-PTP4A2-3:10
5.1 lnc-COL16A1-12:9
5.2 lnc-PTP4A2-3:10