Transcript: lnc-PTPA-1:6

Basic information

LNCipedia transcript ID: lnc-PTPA-1:6 
LNCipedia gene ID: lnc-PTPA-1
Ensembl Gene ID: ENSG00000241084
Ensembl Transcript ID: ENST00000435157
Location (hg38): chr9:129259062-129261581
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 395 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015757; ENST00000435157; ENST00000435157.1; RP11-344B5.3-001; OTTHUMT00000054570.1; NONHSAT135035
Alternative gene names: XLOC_007581; linc-C9orf106-3; ENSG00000241084; RP11-344B5.3; ENSG00000241084.1; OTTHUMG00000020776.1; AL161785.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.2625 non-coding 
CPAT coding probability 1.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTPA-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPP2R4-1:2
3.1 lnc-PPP2R4-2:2
4.0 lnc-PPP2R4-2:2
4.1 lnc-PPP2R4-1:7
5.0 lnc-PPP2R4-1:7
5.1 lnc-PTPA-5:7
5.2 lnc-PTPA-1:6