Transcript: lnc-PTPA-3:1

Basic information

LNCipedia transcript ID: lnc-PTPA-3:1 
LNCipedia gene ID: lnc-PTPA-3
RefSeq ID: NR_121587
Location (hg38): chr9:129282416-129285719
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 616 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_121587; NR_121587.1
Alternative gene names: LOC101929331


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -75.4135 non-coding 
CPAT coding probability 15.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTPA-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPP2R4-3:2
4.0 lnc-PPP2R4-3:2
4.1 lnc-PPP2R4-3:2
5.0 lnc-PPP2R4-3:2
5.1 lnc-PTPA-10:1
5.2 lnc-PTPA-3:1