Transcript: lnc-PTPA-3:2

Basic information

LNCipedia transcript ID: lnc-PTPA-3:2 
LNCipedia gene ID: lnc-PTPA-3
Ensembl Gene ID: ENSG00000224307
Ensembl Transcript ID: ENST00000455981
Location (hg38): chr9:129282458-129285728
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 583 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000455981; ENST00000455981.1; RP11-344B5.2-001; OTTHUMT00000054569.2; NONHSAT135036
Alternative gene names: ENSG00000224307; RP11-344B5.2; ENSG00000224307.1; OTTHUMG00000020775.2; AL161785.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -75.4135 non-coding 
CPAT coding probability 0.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTPA-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPP2R4-2:1
3.1 lnc-PPP2R4-3:1
4.0 lnc-PPP2R4-3:1
4.1 lnc-PPP2R4-3:1
5.0 lnc-PPP2R4-3:1
5.1 lnc-PTPA-10:2
5.2 lnc-PTPA-3:2