Transcript: lnc-PTPA-3:8

Basic information

LNCipedia transcript ID: lnc-PTPA-3:8 
LNCipedia gene ID: lnc-PTPA-3
Location (hg38): chr9:129282510-129313636
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1696 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000224307.1|HBMT00001474116.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -5.4088 non-coding 
CPAT coding probability 7.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTPA-3:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PPP2R4-3:7
5.0 lnc-PPP2R4-3:7
5.1 lnc-PTPA-10:8
5.2 lnc-PTPA-3:8