Transcript: lnc-PTPDC1-2:1

Basic information

LNCipedia transcript ID: lnc-PTPDC1-2:1 
LNCipedia gene ID: lnc-PTPDC1-2
Ensembl Gene ID: ENSG00000231990
Ensembl Transcript ID: ENST00000443771
Location (hg38): chr9:93857083-93858333
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 391 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015718; ENST00000443771; ENST00000443771.1; RP11-53B5.1-001; OTTHUMT00000053163.1
Alternative gene names: XLOC_007465; linc-PTPDC1-2; ENSG00000231990; RP11-53B5.1; ENSG00000231990.1; OTTHUMG00000020254.1; AL442224.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -121.2598 non-coding 
CPAT coding probability 1.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTPDC1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTPDC1-2:1
3.1 lnc-PTPDC1-2:1
4.0 lnc-PTPDC1-2:1
4.1 lnc-PTPDC1-2:1
5.0 lnc-PTPDC1-2:1
5.1 lnc-FAM120A-9:2
5.2 lnc-PTPDC1-2:1