Transcript: lnc-PTPN1-1:2

Basic information

LNCipedia transcript ID: lnc-PTPN1-1:2 
LNCipedia gene ID: lnc-PTPN1-1
Ensembl Gene ID: ENSG00000234693
Ensembl Transcript ID: ENST00000435177
Location (hg38): chr20:50653202-50662275
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 539 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000435177.1; RP4-530I15.6-002; OTTHUMT00000258384.1; NONHSAT080317
Alternative gene names: ENSG00000234693.1; RP4-530I15.6; OTTHUMG00000032727.2; AL353653.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -180.5816 non-coding 
CPAT coding probability 17.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTPN1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTPN1-1:2
4.0 lnc-PTPN1-1:2
4.1 lnc-PTPN1-1:2
5.0 lnc-PTPN1-1:2
5.1 lnc-SNAI1-29:2
5.2 lnc-PTPN1-1:2