Transcript: lnc-PTPN14-2:1

Basic information

LNCipedia transcript ID: lnc-PTPN14-2:1 
LNCipedia gene ID: lnc-PTPN14-2
Location (hg38): chr1:214254086-214279294
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 9460 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001819; NONHSAT009453
Alternative gene names: XLOC_001200; linc-ANGEL2-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 24.2686 non-coding 
CPAT coding probability 4.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTPN14-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTPN14-1:1
3.1 lnc-PTPN14-2:1
4.0 lnc-PTPN14-2:1
4.1 lnc-PTPN14-2:1
5.0 lnc-PTPN14-2:1
5.1 lnc-IRF6-66:5
5.2 lnc-PTPN14-2:1