Transcript: lnc-PTPN2-2:5

Basic information

LNCipedia transcript ID: lnc-PTPN2-2:5 
LNCipedia gene ID: lnc-PTPN2-2
Location (hg38): chr18:12739490-12749421
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 569 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: NONHSAT058389; ENST00000589930.1
Alternative gene names: ENSG00000267654.1; RP11-973H7.4; LINC01882


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.8522 non-coding 
CPAT coding probability 3.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTPN2-2:5 no no no no

Available literature

  1. Yang (2015), Genome-wide analysis of long noncoding RNA profile in human gastric epithelial cell response to Helicobacter pylori., Jpn. J. Infect. Dis.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTPN2-2:5
4.0 lnc-PTPN2-2:5
4.1 lnc-PTPN2-2:5
5.0 lnc-PTPN2-2:5
5.1 lnc-SMAD2-256:11
5.2 lnc-PTPN2-2:5