Transcript: lnc-PTPN2-6:2

Basic information

LNCipedia transcript ID: lnc-PTPN2-6:2 
LNCipedia gene ID: lnc-PTPN2-6
Location (hg38): chr18:12984694-12991145
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 446 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000266969.1|ENST00000588211.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -298.865 non-coding 
CPAT coding probability 1.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTPN2-6:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PTPN2-6:2
5.0 lnc-PTPN2-6:2
5.1 lnc-SMAD2-251:2
5.2 lnc-PTPN2-6:2