Transcript: lnc-PTPN3-1:1

Basic information

LNCipedia transcript ID: lnc-PTPN3-1:1 
LNCipedia gene ID: lnc-PTPN3-1
Location (hg38): chr9:109375466-109378980
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 587 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000447271.1; RP11-18A3.4-001; OTTHUMT00000053595.1; NONHSAT133945
Alternative gene names: ENSG00000244202.1; RP11-18A3.4; OTTHUMG00000020472.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.4446 non-coding 
CPAT coding probability 4.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTPN3-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTPN3-1:1
4.0 lnc-PTPN3-1:1
4.1 lnc-PTPN3-1:1
5.0 lnc-PTPN3-1:1
5.1 lnc-SLC46A2-59:1
5.2 lnc-PTPN3-1:1