Transcript: lnc-PTPRC-1:1

Basic information

LNCipedia transcript ID: lnc-PTPRC-1:1 
LNCipedia gene ID: lnc-PTPRC-1
Ensembl Gene ID: ENSG00000225172
Ensembl Transcript ID: ENST00000422480
Location (hg38): chr1:198983321-198985201
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 835 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000364; ENST00000422480; ENST00000422480.1; RP11-16L9.2-001; OTTHUMT00000087438.1; NONHSAT008668; ENST00000422480.5
Alternative gene names: XLOC_000513; linc-NR5A2-2; ENSG00000225172; RP11-16L9.2; ENSG00000225172.1; OTTHUMG00000035890.1; ENSG00000225172.5; AC096631.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -68.8907 non-coding 
CPAT coding probability 5.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTPRC-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTPRC-1:1
3.1 lnc-PTPRC-1:1
4.0 lnc-PTPRC-1:1
4.1 lnc-PTPRC-1:1
5.0 lnc-PTPRC-1:1
5.1 lnc-CFHR3-29:1
5.2 lnc-PTPRC-1:1