Transcript: lnc-PTPRR-2:1

Basic information

LNCipedia transcript ID: lnc-PTPRR-2:1 
LNCipedia gene ID: lnc-PTPRR-2
Ensembl Gene ID: ENSG00000257265
Ensembl Transcript ID: ENST00000552098
Location (hg38): chr12:71007773-71032083
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 541 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000552098.1; CTD-2021H9.1-001; OTTHUMT00000404734.1; NONHSAT029427
Alternative gene names: ENSG00000257265.1; CTD-2021H9.1; OTTHUMG00000169539.1; AC123905.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -169.7491 non-coding 
CPAT coding probability 7.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTPRR-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTD-2021H9.3.1-2:1
4.0 lnc-CTD-2021H9.3.1-2:1
4.1 lnc-CTD-2021H9.3.1-2:1
5.0 lnc-CTD-2021H9.3.1-2:1
5.1 lnc-LRRC10-15:1
5.2 lnc-PTPRR-2:1