Transcript: lnc-PTPRU-5:1

Basic information

LNCipedia transcript ID: lnc-PTPRU-5:1 
LNCipedia gene ID: lnc-PTPRU-5
Ensembl Gene ID: ENSG00000233372
Ensembl Transcript ID: ENST00000441046
Location (hg38): chr1:30140263-30141607
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 551 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000175; ENST00000441046; ENST00000441046.1; RP5-893G23.1-001; OTTHUMT00000010419.1; NONHSAT002043
Alternative gene names: XLOC_000117; linc-ZCCHC17-6; ENSG00000233372; RP5-893G23.1; ENSG00000233372.1; OTTHUMG00000003685.1; AL137076.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.4968 non-coding 
CPAT coding probability 4.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTPRU-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTPRU-4:1
3.1 lnc-PTPRU-5:1
4.0 lnc-PTPRU-5:1
4.1 lnc-PTPRU-5:1
5.0 lnc-PTPRU-5:1
5.1 lnc-ZCCHC17-20:2
5.2 lnc-PTPRU-5:1