Transcript: lnc-PTRH2-3:2

Basic information

LNCipedia transcript ID: lnc-PTRH2-3:2 
LNCipedia gene ID: lnc-PTRH2-3
Ensembl Gene ID: ENSG00000273702
Ensembl Transcript ID: ENST00000611877
Location (hg38): chr17:59618553-59619714
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1162 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000611877.1
Alternative gene names: ENSG00000273702.1; RP11-758H9.2; AC091271.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -192.5468 non-coding 
CPAT coding probability 5.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTRH2-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PTRH2-3:2
4.1 lnc-PTRH2-3:2
5.0 lnc-PTRH2-3:2
5.1 lnc-PTRH2-3:2
5.2 lnc-PTRH2-3:2