Transcript: lnc-PTRH2-3:3

Basic information

LNCipedia transcript ID: lnc-PTRH2-3:3 
LNCipedia gene ID: lnc-PTRH2-3
Location (hg38): chr17:59618553-59619831
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1279 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000034109.1|MICT00000151591.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -192.5468 non-coding 
CPAT coding probability 3.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTRH2-3:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PTRH2-3:3
5.0 lnc-PTRH2-3:3
5.1 lnc-PTRH2-3:3
5.2 lnc-PTRH2-3:3