Transcript: lnc-PTS-1:18

Basic information

LNCipedia transcript ID: lnc-PTS-1:18 
LNCipedia gene ID: lnc-PTS-1
Ensembl Gene ID: ENSG00000250303
Ensembl Transcript ID: ENST00000532168
Location (hg38): chr11:112280486-112291776
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 697 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000532168.2
Alternative gene names: ENSG00000250303.3; RP11-356J5.12; AP002884.3; AP002884.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -55.5714 non-coding 
CPAT coding probability 1.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTS-1:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PTS-1:18
4.1 lnc-PTS-1:18
5.0 lnc-PTS-1:18
5.1 lnc-PTS-7:10
5.2 lnc-PTS-1:18