Transcript: lnc-PTS-1:31

Basic information

LNCipedia transcript ID: lnc-PTS-1:31 
LNCipedia gene ID: lnc-PTS-1
Location (hg38): chr11:112365855-112377821
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2732 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019476; NONHSAT024217
Alternative gene names: XLOC_009279; linc-NCAM1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.4649 non-coding 
CPAT coding probability 15.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTS-1:31 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTS-2:2
3.1 lnc-PTS-2:2
4.0 lnc-PTS-2:2
4.1 lnc-PTS-1:31
5.0 lnc-PTS-1:31
5.1 lnc-PTS-7:31
5.2 lnc-PTS-1:31