Transcript: lnc-PTS-1:4

Basic information

LNCipedia transcript ID: lnc-PTS-1:4 
LNCipedia gene ID: lnc-PTS-1
Ensembl Gene ID: ENSG00000250303
Ensembl Transcript ID: ENST00000529938
Location (hg38): chr11:112290268-112292170
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1166 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000529938; ENST00000529938.1; RP11-356J5.12-003; OTTHUMT00000393663.1
Alternative gene names: ENSG00000250303; RP11-356J5.12; ENSG00000250303.2; OTTHUMG00000167191.1; ENSG00000250303.3; AP002884.3; AP002884.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.7064 non-coding 
CPAT coding probability 12.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTS-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTS-1:4
3.1 lnc-PTS-1:4
4.0 lnc-PTS-1:4
4.1 lnc-PTS-1:4
5.0 lnc-PTS-1:4
5.1 lnc-PTS-7:15
5.2 lnc-PTS-1:4