Transcript: lnc-PTS-1:5

Basic information

LNCipedia transcript ID: lnc-PTS-1:5 
LNCipedia gene ID: lnc-PTS-1
Ensembl Gene ID: ENSG00000250303
Ensembl Transcript ID: ENST00000527511
Location (hg38): chr11:112292573-112294116
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 597 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000527511; ENST00000527511.1; RP11-356J5.12-004; OTTHUMT00000393664.1; NONHSAT024214
Alternative gene names: ENSG00000250303; RP11-356J5.12; ENSG00000250303.2; OTTHUMG00000167191.1; ENSG00000250303.3; AP002884.3; AP002884.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -287.1233 non-coding 
CPAT coding probability 0.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTS-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTS-1:5
3.1 lnc-PTS-1:5
4.0 lnc-PTS-1:5
4.1 lnc-PTS-1:5
5.0 lnc-PTS-1:5
5.1 lnc-PTS-7:29
5.2 lnc-PTS-1:5