Transcript: lnc-PTX3-4:5

Basic information

LNCipedia transcript ID: lnc-PTX3-4:5 
LNCipedia gene ID: lnc-PTX3-4
Ensembl Gene ID: ENSG00000243176
Ensembl Transcript ID: ENST00000488040
Location (hg38): chr3:157175347-157285291
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 567 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000488040.1; RP11-550I24.2-003; OTTHUMT00000352025.1; NONHSAT092908; ENST00000488040.5
Alternative gene names: ENSG00000243176.1; RP11-550I24.2; OTTHUMG00000158749.1; ENSG00000243176.5; AC092944.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -198.4803 non-coding 
CPAT coding probability 8.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTX3-4:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LEKR1-4:3
4.0 lnc-PTX3-4:5
4.1 lnc-PTX3-4:5
5.0 lnc-PTX3-4:5
5.1 lnc-PTX3-4:5
5.2 lnc-PTX3-4:5