Transcript: lnc-PUS3-1:2

Basic information

LNCipedia transcript ID: lnc-PUS3-1:2 
LNCipedia gene ID: lnc-PUS3-1
Ensembl Gene ID: ENSG00000260209
Ensembl Transcript ID: ENST00000564354
Location (hg38): chr11:125873031-125874398
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 808 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564354.1; RP11-680F20.10-002; OTTHUMT00000422466.1; NONHSAT024978
Alternative gene names: ENSG00000260209.1; RP11-680F20.10; OTTHUMG00000173206.1; AP000842.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 21.2654 non-coding 
CPAT coding probability 4.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PUS3-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PUS3-1:2
4.0 lnc-PUS3-1:2
4.1 lnc-PUS3-1:2
5.0 lnc-PUS3-1:2
5.1 lnc-ADAMTS8-52:3
5.2 lnc-PUS3-1:2