Transcript: lnc-PUS3-2:3

Basic information

LNCipedia transcript ID: lnc-PUS3-2:3 
LNCipedia gene ID: lnc-PUS3-2
Location (hg38): chr11:125931173-125939395
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1005 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019794; NONHSAT024989
Alternative gene names: XLOC_009595; linc-PUS3-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -166.5274 non-coding 
CPAT coding probability 1.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PUS3-2:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-680F20.9.1-1:1
3.1 lnc-RP11-680F20.4.1-2:1
4.0 lnc-RP11-680F20.9.1-2:1
4.1 lnc-RP11-680F20.9.1-2:1
5.0 lnc-RP11-680F20.9.1-2:1
5.1 lnc-ADAMTS8-51:1
5.2 lnc-PUS3-2:3