Transcript: lnc-PWP2-1:7

Basic information

LNCipedia transcript ID: lnc-PWP2-1:7 
LNCipedia gene ID: lnc-PWP2-1
Ensembl Gene ID: ENSG00000237604
Ensembl Transcript ID: ENST00000411956
Location (hg38): chr21:44175489-44176453
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 821 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028854; ENST00000411956; ENST00000411956.1; AP001056.1-001; OTTHUMT00000195817.1; NONHSAT082490
Alternative gene names: XLOC_013966; linc-AIRE-4; ENSG00000237604; AP001056.1; ENSG00000237604.1; OTTHUMG00000086912.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.2046 non-coding 
CPAT coding probability 17.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PWP2-1:7 no no no no

Available literature

  1. Gu (2015), Aberrant expression of long noncoding RNAs in chronic thromboembolic pulmonary hypertension., Mol Med Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C21orf33-1:1
3.1 lnc-C21orf33-1:1
4.0 lnc-C21orf33-1:1
4.1 lnc-C21orf33-1:1
5.0 lnc-C21orf33-1:1
5.1 lnc-RRP1-13:6
5.2 lnc-PWP2-1:7