Transcript: lnc-PWP2-2:3

Basic information

LNCipedia transcript ID: lnc-PWP2-2:3 
LNCipedia gene ID: lnc-PWP2-2
Location (hg38): chr21:44201290-44202696
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 799 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: TCONS_00028855; ENST00000437557.1; AP001057.1-001; OTTHUMT00000195816.1; NONHSAT082493
Alternative gene names: XLOC_013967; linc-AIRE-3; ENSG00000232124.1; AP001057.1; OTTHUMG00000086911.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.2062 non-coding 
CPAT coding probability 18.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PWP2-2:3 no no no no

Available literature

  1. Miano (2016), Luminal long non-coding RNAs regulated by estrogen receptor alpha in a ligand-independent manner show functional roles in breast cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C21orf33-2:1
3.1 lnc-C21orf33-2:1
4.0 lnc-C21orf33-2:1
4.1 lnc-C21orf33-2:1
5.0 lnc-C21orf33-2:1
5.1 lnc-RRP1-15:3
5.2 lnc-PWP2-2:3