Transcript: lnc-PXDC1-15:11

Basic information

LNCipedia transcript ID: lnc-PXDC1-15:11 
LNCipedia gene ID: lnc-PXDC1-15
Location (hg38): chr6:3906744-3912002
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 968 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000260604.1|FTMT22100030622.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -29.2669 non-coding 
CPAT coding probability 13.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PXDC1-15:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PXDC1-15:11
5.0 lnc-PXDC1-15:11
5.1 lnc-ECI2-18:7
5.2 lnc-PXDC1-15:11