Transcript: lnc-PXDC1-15:13

Basic information

LNCipedia transcript ID: lnc-PXDC1-15:13 
LNCipedia gene ID: lnc-PXDC1-15
Ensembl Gene ID: ENSG00000260604
Ensembl Transcript ID: ENST00000566733
Location (hg38): chr6:3904920-3911979
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 7060 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000566733.2
Alternative gene names: ENSG00000260604.2; RP1-140K8.5; AL590004.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -9.1968 non-coding 
CPAT coding probability 7.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PXDC1-15:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C6orf146-3:5
4.1 lnc-PXDC1-15:13
5.0 lnc-PXDC1-15:13
5.1 lnc-ECI2-18:9
5.2 lnc-PXDC1-15:13