Transcript: lnc-PXDC1-1:6

Basic information

LNCipedia transcript ID: lnc-PXDC1-1:6 
LNCipedia gene ID: lnc-PXDC1-1
Location (hg38): chr6:3595327-3632053
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 360 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012053; NONHSAT107170
Alternative gene names: XLOC_005584; linc-SLC22A23


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.8279 non-coding 
CPAT coding probability 0.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PXDC1-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PXDC1-2:1
3.1 lnc-PXDC1-2:1
4.0 lnc-PXDC1-1:6
4.1 lnc-PXDC1-1:6
5.0 lnc-PXDC1-1:6
5.1 lnc-ECI2-37:5
5.2 lnc-PXDC1-1:6