Transcript: lnc-PXDN-1:1

Basic information

LNCipedia transcript ID: lnc-PXDN-1:1 
LNCipedia gene ID: lnc-PXDN-1
Ensembl Gene ID: ENSG00000203635
Ensembl Transcript ID: ENST00000366424
Location (hg38): chr2:1620510-1625419
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1641 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003150; ENST00000366424; ENST00000366424.2; AC144450.2-001; OTTHUMT00000322439.1; NONHSAT068656
Alternative gene names: XLOC_001942; linc-TMEM18-13; ENSG00000203635; AC144450.2; ENSG00000203635.2; OTTHUMG00000151382.1; AC144450.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 37.3116 non-coding 
CPAT coding probability 13.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PXDN-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PXDN-1:1
3.1 lnc-PXDN-1:1
4.0 lnc-PXDN-1:1
4.1 lnc-PXDN-1:1
5.0 lnc-PXDN-1:1
5.1 lnc-RAD51AP2-206:1
5.2 lnc-PXDN-1:1