Transcript: lnc-PXMP4-1:1

Basic information

LNCipedia transcript ID: lnc-PXMP4-1:1 
LNCipedia gene ID: lnc-PXMP4-1
Location (hg38): chr20:33728931-33731828
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 401 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00028037; ENST00000441029.1; RP4-553F4.2-001; OTTHUMT00000078740.1; NONHSAT079403
Alternative gene names: XLOC_013726; linc-PXMP4-1; ENSG00000229188.1; RP4-553F4.2; OTTHUMG00000032274.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -168.4263 non-coding 
CPAT coding probability 1.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PXMP4-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PXMP4-1:1
3.1 lnc-PXMP4-1:1
4.0 lnc-PXMP4-1:1
4.1 lnc-PXMP4-1:1
5.0 lnc-PXMP4-1:1
5.1 lnc-MMP24OS-31:1
5.2 lnc-PXMP4-1:1