Transcript: lnc-PYCARD-1:2

Basic information

LNCipedia transcript ID: lnc-PYCARD-1:2 
LNCipedia gene ID: lnc-PYCARD-1
Location (hg38): chr16:31181916-31184007
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2092 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000260304.1|HBMT00000559718.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -12.2036 non-coding 
CPAT coding probability 0.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PYCARD-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PYCARD-1:2
5.0 lnc-PYCARD-1:2
5.1 lnc-SULT1A2-107:1
5.2 lnc-PYCARD-1:2