Transcript: lnc-R3HDM4-2:2

Basic information

LNCipedia transcript ID: lnc-R3HDM4-2:2 
LNCipedia gene ID: lnc-R3HDM4-2
Location (hg38): chr19:928257-928817
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 330 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT060202; ENST00000585647.1
Alternative gene names: ENSG00000267159.1; AC005391.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -117.4066 non-coding 
CPAT coding probability 10.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-R3HDM4-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-R3HDM4-2:2
4.0 lnc-R3HDM4-2:2
4.1 lnc-R3HDM4-2:2
5.0 lnc-R3HDM4-2:2
5.1 lnc-ZNF77-129:2
5.2 lnc-R3HDM4-2:2