Transcript: lnc-R3HDM4-2:3

Basic information

LNCipedia transcript ID: lnc-R3HDM4-2:3 
LNCipedia gene ID: lnc-R3HDM4-2
Ensembl Gene ID: ENSG00000267159
Ensembl Transcript ID: ENST00000585647
Location (hg38): chr19:928259-928817
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 328 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000585647.2
Alternative gene names: ENSG00000267159.2; AC005391.2; AC005379.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -117.4066 non-coding 
CPAT coding probability 9.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-R3HDM4-2:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-R3HDM4-2:3
4.1 lnc-R3HDM4-2:3
5.0 lnc-R3HDM4-2:3
5.1 lnc-ZNF77-129:3
5.2 lnc-R3HDM4-2:3