Transcript: lnc-RAB11FIP4-2:1

Basic information

LNCipedia transcript ID: lnc-RAB11FIP4-2:1 
LNCipedia gene ID: lnc-RAB11FIP4-2
Ensembl Gene ID: ENSG00000266877
Ensembl Transcript ID: ENST00000578650
Location (hg38): chr17:31583162-31637543
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 568 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000578650.1; RP1-41C23.1-001; OTTHUMT00000444996.2; NONHSAT052888
Alternative gene names: ENSG00000266877.1; RP1-41C23.1; OTTHUMG00000179148.2; AC007923.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.3008 non-coding 
CPAT coding probability 0.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAB11FIP4-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC003101.1.1-2:1
4.0 lnc-AC003101.1.1-2:1
4.1 lnc-AC003101.1.1-2:1
5.0 lnc-AC003101.1.1-2:1
5.1 lnc-NSRP1-51:1
5.2 lnc-RAB11FIP4-2:1