Transcript: lnc-RAB1A-11:2

Basic information

LNCipedia transcript ID: lnc-RAB1A-11:2 
LNCipedia gene ID: lnc-RAB1A-11
Location (hg38): chr2:65207652-65228398
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 20707 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000048786.1|ENCT00000243186.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 83.5481 coding 
CPAT coding probability 8.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RAB1A-11:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RAB1A-11:2
5.0 lnc-RAB1A-11:2
5.1 lnc-GKN2-78:1
5.2 lnc-RAB1A-11:2