Transcript: lnc-RAB20-4:1

Basic information

LNCipedia transcript ID: lnc-RAB20-4:1 
LNCipedia gene ID: lnc-RAB20-4
Ensembl Gene ID: ENSG00000224821
Ensembl Transcript ID: ENST00000458403
Location (hg38): chr13:110456396-110463287
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1522 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT035148; ENST00000458403.2
Alternative gene names: ENSG00000224821.5; COL4A2-AS2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 95.6397 coding 
CPAT coding probability 99.88% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RAB20-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-COL4A2-AS2-1:1
4.0 COL4A2-AS2:1
4.1 COL4A2-AS2:1
5.0 COL4A2-AS2:1
5.1 lnc-COL4A1-10:1
5.2 lnc-RAB20-4:1