Transcript: lnc-RAB23-53:2

Basic information

LNCipedia transcript ID: lnc-RAB23-53:2 
LNCipedia gene ID: lnc-RAB23-53
Location (hg38): chr6:57946074-57961501
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1638 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000418765; ENST00000418765.1; GUSBP4-005; OTTHUMT00000041058.1; NONHSAT113313; ENST00000418765.5
Alternative gene names: ENSG00000215190; GUSBP4; ENSG00000215190.4; OTTHUMG00000014928.1; LINC00680; ENSG00000215190.8;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 62.0423 coding 
CPAT coding probability 10.40% non-coding 
Bazzini small ORFs 1 coding 
seqAAMERSGPSEVTGSDASGPDPQLVVTMGFTGFGVR
covF1Prop0.225806452
orfFrame8.567540989

In stringent set: no

Locus conservation

Locus conservation?
lnc-RAB23-53:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RAB23-4:2
3.1 lnc-RAB23-4:2
4.0 LINC00680:2
4.1 LINC00680:2
5.0 LINC00680:2
5.1 lnc-GSTA5-53:2
5.2 lnc-RAB23-53:2