Transcript: lnc-RAB23-53:31

Basic information

LNCipedia transcript ID: lnc-RAB23-53:31 
LNCipedia gene ID: lnc-RAB23-53
Ensembl Gene ID: ENSG00000272316
Ensembl Transcript ID: ENST00000606125
Location (hg38): chr6:57908560-57913911
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5352 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000606125.1
Alternative gene names: ENSG00000272316.1; XXbac-BPGBPG55C20.2; ; AL021368.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.2221 non-coding 
CPAT coding probability 1.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAB23-53:31 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RAB23-3:10
4.0 LINC00680:15
4.1 LINC00680:15
5.0 LINC00680:15
5.1 lnc-GSTA5-53:31
5.2 lnc-RAB23-53:31