Transcript: lnc-RAB38-2:1

Basic information

LNCipedia transcript ID: lnc-RAB38-2:1 
LNCipedia gene ID: lnc-RAB38-2
Ensembl Gene ID: ENSG00000255183
Ensembl Transcript ID: ENST00000532606
RefSeq ID: NR_135090
Location (hg38): chr11:87718354-87719411
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 679 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000532606; ENST00000532606.1; RP11-720D4.3-001; OTTHUMT00000393884.1; NONHSAT023525; NR_135090.1
Alternative gene names: ENSG00000255183; RP11-720D4.3; ENSG00000255183.1; OTTHUMG00000167254.1; AP000756.1; LOC105369423


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.1788 non-coding 
CPAT coding probability 0.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAB38-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RAB38-2:1
3.1 lnc-RAB38-2:1
4.0 lnc-RAB38-2:1
4.1 lnc-RAB38-2:1
5.0 lnc-RAB38-2:1
5.1 lnc-NOX4-24:1
5.2 lnc-RAB38-2:1