Transcript: lnc-RAB40B-1:1

Basic information

LNCipedia transcript ID: lnc-RAB40B-1:1 
LNCipedia gene ID: lnc-RAB40B-1
Location (hg38): chr17:82713912-82716255
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 894 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000500746; TCONS_00025257
Alternative gene names: ENSG00000245109; XLOC_012596; linc-RAB40B; AC024361.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.4796 non-coding 
CPAT coding probability 2.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAB40B-1:1 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RAB40B-1:1
3.1 lnc-RAB40B-1:1
4.0 lnc-RAB40B-1:1
4.1 lnc-RAB40B-1:1
5.0 lnc-RAB40B-1:1
5.1 lnc-CD7-27:4
5.2 lnc-RAB40B-1:1