Transcript: lnc-RABEP2-3:1

Basic information

LNCipedia transcript ID: lnc-RABEP2-3:1 
LNCipedia gene ID: lnc-RABEP2-3
Location (hg38): chr16:28974973-28978824
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 467 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000567209.1; RP11-264B17.4-001; OTTHUMT00000433228.1; NONHSAT141555
Alternative gene names: ENSG00000260367.1; RP11-264B17.4; OTTHUMG00000176708.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -98.8032 non-coding 
CPAT coding probability 4.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RABEP2-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RABEP2-3:1
4.0 lnc-RABEP2-3:1
4.1 lnc-RABEP2-3:1
5.0 lnc-RABEP2-3:1
5.1 lnc-SULT1A2-15:1
5.2 lnc-RABEP2-3:1