Transcript: lnc-RABGAP1-1:5

Basic information

LNCipedia transcript ID: lnc-RABGAP1-1:5 
LNCipedia gene ID: lnc-RABGAP1-1
Ensembl Gene ID: ENSG00000261094
Ensembl Transcript ID: ENST00000566531
Location (hg38): chr9:122939420-122940333
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 914 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000566531.1; RP11-355O1.11-001; OTTHUMT00000430303.2; NONHSAT134604
Alternative gene names: ENSG00000261094.1; RP11-355O1.11; OTTHUMG00000175504.2; ENSG00000261094.2; AC007066.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -44.5746 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RABGAP1-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RABGAP1-1:5
4.0 lnc-RABGAP1-1:5
4.1 lnc-RABGAP1-1:5
5.0 lnc-RABGAP1-1:5
5.1 lnc-DAB2IP-24:6
5.2 lnc-RABGAP1-1:5