Transcript: lnc-RACGAP1-1:1

Basic information

LNCipedia transcript ID: lnc-RACGAP1-1:1 
LNCipedia gene ID: lnc-RACGAP1-1
Ensembl Gene ID: ENSG00000257588
Ensembl Transcript ID: ENST00000550214
Location (hg38): chr12:49958872-49962924
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1031 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000550214.1; RP11-469H8.6-001; OTTHUMT00000405996.1; NONHSAT028165
Alternative gene names: ENSG00000257588.1; RP11-469H8.6; OTTHUMG00000169810.1; AC025154.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -144.5143 non-coding 
CPAT coding probability 9.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RACGAP1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RACGAP1-1:1
4.0 lnc-RACGAP1-1:1
4.1 lnc-RACGAP1-1:1
5.0 lnc-RACGAP1-1:1
5.1 lnc-RACGAP1-1:1
5.2 lnc-RACGAP1-1:1