Transcript: lnc-RACGAP1-1:2

Basic information

LNCipedia transcript ID: lnc-RACGAP1-1:2 
LNCipedia gene ID: lnc-RACGAP1-1
Ensembl Gene ID: ENSG00000257588
Ensembl Transcript ID: ENST00000552379
Location (hg38): chr12:49951968-49962922
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 592 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000552379.1; RP11-469H8.6-002; OTTHUMT00000405995.1
Alternative gene names: ENSG00000257588.1; RP11-469H8.6; OTTHUMG00000169810.1; AC025154.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 261.3094 coding 
CPAT coding probability 80.02% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RACGAP1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RACGAP1-1:2
4.0 lnc-RACGAP1-1:2
4.1 lnc-RACGAP1-1:2
5.0 lnc-RACGAP1-1:2
5.1 lnc-RACGAP1-1:2
5.2 lnc-RACGAP1-1:2