Transcript: lnc-RACK1-1:3

Basic information

LNCipedia transcript ID: lnc-RACK1-1:3 
LNCipedia gene ID: lnc-RACK1-1
Ensembl Gene ID: ENSG00000247049
Ensembl Transcript ID: ENST00000499096
Location (hg38): chr5:181224646-181230685
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 566 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000499096.2; CTC-338M12.7-001; OTTHUMT00000371337.1
Alternative gene names: ENSG00000247049.2; CTC-338M12.7; OTTHUMG00000163016.1; AC008443.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 79.9683 coding 
CPAT coding probability 6.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RACK1-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GNB2L1-1:1
4.0 lnc-GNB2L1-1:1
4.1 lnc-GNB2L1-1:1
5.0 lnc-GNB2L1-1:1
5.1 lnc-RACK1-1:1
5.2 lnc-RACK1-1:3